Detailed information of SNP:
|
SNP ID:
sf0137798813(Gbrowse)
Chromosome: chr01 Position: 37798813 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 85.44% | 14.56% |
| All Indica | 796 | 75.13% | 24.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 68.36% | 31.64% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137798813 | T->C | INTERGENIC | None |