Detailed information of SNP:
|
SNP ID:
sf0137823475(Gbrowse)
Chromosome: chr01 Position: 37823475 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 68.35% | 31.65% |
| All Indica | 790 | 45.70% | 54.30% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 49.19% | 50.81% |
| Indica II | 211 | 26.54% | 73.46% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137823475 | G->A | LOC_Os01g65169(LOC_Os01g65169.1) | INTRON |