Detailed information of SNP:
|
SNP ID:
sf0137828639(Gbrowse)
Chromosome: chr01 Position: 37828639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 81.55% | 18.45% |
| All Indica | 796 | 74.75% | 25.25% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 68.45% | 31.55% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137828639 | G->A | LOC_Os01g65190(LOC_Os01g65190.1) | Non-Synonymous SNP |