Detailed information of SNP:
|
SNP ID:
sf0137831671(Gbrowse)
Chromosome: chr01 Position: 37831671 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.26% | 44.74% |
| All Indica | 797 | 25.85% | 74.15% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 209 | 21.53% | 78.47% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137831671 | G->A | INTERGENIC | None |