Detailed information of SNP:
|
SNP ID:
sf0137833184(Gbrowse)
Chromosome: chr01 Position: 37833184 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.99% | 18.01% |
| All Indica | 797 | 75.16% | 24.84% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 68.53% | 31.47% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137833184 | C->T | LOC_Os01g65200(LOC_Os01g65200.1) | SNPs that introduce initiation codons |
| sf0137833184 | C->T | LOC_Os01g65200(LOC_Os01g65200.2) | SNPs that introduce initiation codons |
| sf0137833184 | C->T | LOC_Os01g65200(LOC_Os01g65200.3) | SNPs that introduce initiation codons |