Detailed information of SNP:
|
SNP ID:
sf0137836882(Gbrowse)
Chromosome: chr01 Position: 37836882 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.66% | 48.34% |
| All Indica | 797 | 25.97% | 74.03% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 209 | 22.01% | 77.99% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137836882 | T->C | LOC_Os01g65210(LOC_Os01g65210.1) | INTRON |