Detailed information of SNP:
|
SNP ID:
sf0137837333(Gbrowse)
Chromosome: chr01 Position: 37837333 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.77% | 48.23% |
| All Indica | 797 | 26.10% | 73.90% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 31.73% | 68.27% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 209 | 22.01% | 77.99% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137837333 | A->G | LOC_Os01g65210(LOC_Os01g65210.1) | INTRON |