Detailed information of SNP:
|
SNP ID:
sf0137837339(Gbrowse)
Chromosome: chr01 Position: 37837339 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 88.29% | 11.71% |
| All Indica | 750 | 79.87% | 20.13% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 92.26% | 7.74% |
| Indica II | 201 | 55.72% | 44.28% |
| Indica Intermediate | 200 | 82.50% | 17.50% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137837339 | G->A | LOC_Os01g65210(LOC_Os01g65210.1) | INTRON |