Detailed information of SNP:
|
SNP ID:
sf0137875169(Gbrowse)
Chromosome: chr01 Position: 37875169 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 86.74% | 13.26% |
| All Indica | 748 | 77.27% | 22.73% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 90.62% | 9.38% |
| Indica II | 196 | 49.49% | 50.51% |
| Indica Intermediate | 200 | 81.00% | 19.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137875169 | C->T | INTERGENIC | None |