Detailed information of SNP:
SNP ID:
sf0137880199(Gbrowse)
Chromosome: chr01 Position: 37880199 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1414 | 63.79% | 36.21% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 496 | 3.02% | 96.98% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 334 | 2.40% | 97.60% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 5.88% | 94.12% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0137880199 | T->C | INTERGENIC | None |