Detailed information of SNP:
|
SNP ID:
sf0137880820(Gbrowse)
Chromosome: chr01 Position: 37880820 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 82.12% | 17.88% |
| All Indica | 796 | 75.75% | 24.25% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137880820 | C->T | LOC_Os01g65290(LOC_Os01g65290.1) | Synonymous |