Detailed information of SNP:
|
SNP ID:
sf0137881348(Gbrowse)
Chromosome: chr01 Position: 37881348 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 55.71% | 44.29% |
| All Indica | 790 | 26.58% | 73.42% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 206 | 25.24% | 74.76% |
| Indica Intermediate | 209 | 20.57% | 79.43% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137881348 | C->T | LOC_Os01g65290(LOC_Os01g65290.1) | Synonymous |