Detailed information of SNP:
|
SNP ID:
sf0137918004(Gbrowse)
Chromosome: chr01 Position: 37918004 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.34% | 45.66% |
| All Indica | 798 | 24.19% | 75.81% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 210 | 18.10% | 81.90% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137918004 | G->A | INTERGENIC | None |