Detailed information of SNP:
|
SNP ID:
sf0137933515(Gbrowse)
Chromosome: chr01 Position: 37933515 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 82.12% | 17.88% |
| All Indica | 795 | 75.97% | 24.03% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137933515 | C->T | INTERGENIC | None |