Detailed information of SNP:
|
SNP ID:
sf0137934134(Gbrowse)
Chromosome: chr01 Position: 37934134 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 85.80% | 14.20% |
| All Indica | 795 | 75.85% | 24.15% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.07% | 30.93% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137934134 | C->G | INTERGENIC | None |