Detailed information of SNP:
|
SNP ID:
sf0137961136(Gbrowse)
Chromosome: chr01 Position: 37961136 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1206 | 72.06% | 27.94% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 340 | 10.88% | 89.12% |
| Aus | 20 | 90.00% | 10.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 211 | 14.69% | 85.31% |
| Tropical Japonica | 76 | 3.95% | 96.05% |
| Japonica Intermediate | 53 | 5.66% | 94.34% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 34 | 58.82% | 41.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137961136 | T->A | INTERGENIC | None |