Detailed information of SNP:
SNP ID:
sf0138011053(Gbrowse)
Chromosome: chr01 Position: 38011053 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1407 | 94.03% | 5.97% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 485 | 83.09% | 16.91% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 323 | 79.26% | 20.74% |
Tropical Japonica | 94 | 87.23% | 12.77% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0138011053 | C->T | LOC_Os01g65480(LOC_Os01g65480.1) | UTR_3_PRIME |