Detailed information of SNP:
|
SNP ID:
sf0138023226(Gbrowse)
Chromosome: chr01 Position: 38023226 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 74.95% | 25.05% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 464 | 31.03% | 68.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 310 | 34.19% | 65.81% |
| Tropical Japonica | 89 | 14.61% | 85.39% |
| Japonica Intermediate | 65 | 38.46% | 61.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138023226 | C->A | INTERGENIC | None |