Detailed information of SNP:
|
SNP ID:
sf0138057918(Gbrowse)
Chromosome: chr01 Position: 38057918 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 92.61% | 7.39% |
| All Indica | 754 | 99.47% | 0.53% |
| All Japonica | 463 | 90.93% | 9.07% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 351 | 99.72% | 0.28% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 197 | 99.49% | 0.51% |
| Temperate Japonica | 314 | 86.62% | 13.38% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138057918 | T->A | INTERGENIC | None |