Detailed information of SNP:
|
SNP ID:
sf0138092082(Gbrowse)
Chromosome: chr01 Position: 38092082 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 72.10% | 27.90% |
| All Indica | 769 | 52.15% | 47.85% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 355 | 59.72% | 40.28% |
| Indica II | 208 | 25.48% | 74.52% |
| Indica Intermediate | 206 | 66.02% | 33.98% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138092082 | A->G | LOC_Os01g65610(LOC_Os01g65610.1) | INTRON |