Detailed information of SNP:
|
SNP ID:
sf0138102638(Gbrowse)
Chromosome: chr01 Position: 38102638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 79.22% | 20.78% |
| All Indica | 771 | 65.37% | 34.63% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 83.89% | 16.11% |
| Indica II | 205 | 24.88% | 75.12% |
| Indica Intermediate | 206 | 73.30% | 26.70% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138102638 | G->A | INTERGENIC | None |