Detailed information of SNP:
|
SNP ID:
sf0138139552(Gbrowse)
Chromosome: chr01 Position: 38139552 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 62.17% | 37.83% |
| All Indica | 766 | 41.91% | 58.09% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 357 | 47.62% | 52.38% |
| Indica II | 211 | 22.75% | 77.25% |
| Indica Intermediate | 198 | 52.02% | 47.98% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138139552 | C->T | LOC_Os01g65680(LOC_Os01g65680.1) | INTRON |