Detailed information of SNP:
|
SNP ID:
sf0138146949(Gbrowse)
Chromosome: chr01 Position: 38146949 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.63% | 4.37% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138146949 | C->T | LOC_Os01g65692(LOC_Os01g65692.1) | UTR_5_PRIME |