Detailed information of SNP:
|
SNP ID:
sf0138167997(Gbrowse)
Chromosome: chr01 Position: 38167997 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 55.99% | 44.01% |
| All Indica | 792 | 87.25% | 12.75% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 86.29% | 13.71% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138167997 | C->T | INTERGENIC | None |