Detailed information of SNP:
|
SNP ID:
sf0138168002(Gbrowse)
Chromosome: chr01 Position: 38168002 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.48% | 39.52% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138168002 | A->G | INTERGENIC | None |