Detailed information of SNP:
|
SNP ID:
sf0138168015(Gbrowse)
Chromosome: chr01 Position: 38168015 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 73.31% | 26.69% |
| All Indica | 773 | 54.98% | 45.02% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 365 | 61.10% | 38.90% |
| Indica II | 205 | 35.61% | 64.39% |
| Indica Intermediate | 203 | 63.55% | 36.45% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138168015 | C->T | INTERGENIC | None |