Detailed information of SNP:
|
SNP ID:
sf0138181998(Gbrowse)
Chromosome: chr01 Position: 38181998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 97.49% | 2.51% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 471 | 96.39% | 3.61% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 99.68% | 0.32% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138181998 | C->T | INTERGENIC | None |