Detailed information of SNP:
|
SNP ID:
sf0138182941(Gbrowse)
Chromosome: chr01 Position: 38182941 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 87.94% | 12.06% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 421 | 63.66% | 36.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 279 | 64.16% | 35.84% |
| Tropical Japonica | 82 | 53.66% | 46.34% |
| Japonica Intermediate | 60 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138182941 | C->T | INTERGENIC | None |