Detailed information of SNP:
|
SNP ID:
sf0138315890(Gbrowse)
Chromosome: chr01 Position: 38315890 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.46% | 49.54% |
| All Indica | 795 | 24.53% | 75.47% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 207 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138315890 | T->C | INTERGENIC | None |