Detailed information of SNP:
|
SNP ID:
sf0138331402(Gbrowse)
Chromosome: chr01 Position: 38331402 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.45% | 45.55% |
| All Indica | 796 | 24.75% | 75.25% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 208 | 25.48% | 74.52% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138331402 | A->G | LOC_Os01g66050(LOC_Os01g66050.1) | Synonymous |