Detailed information of SNP:
|
SNP ID:
sf0138417696(Gbrowse)
Chromosome: chr01 Position: 38417696 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 78.53% | 21.47% |
| All Indica | 769 | 63.85% | 36.15% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 86.78% | 13.22% |
| Indica II | 201 | 14.93% | 85.07% |
| Indica Intermediate | 205 | 71.22% | 28.78% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138417696 | A->G | LOC_Os01g66140(LOC_Os01g66140.1) | INTRON |