Detailed information of SNP:
|
SNP ID:
sf0138426408(Gbrowse)
Chromosome: chr01 Position: 38426408 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.03% | 35.97% |
| All Indica | 798 | 39.85% | 60.15% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138426408 | C->A | INTERGENIC | None |