Detailed information of SNP:
|
SNP ID:
sf0138427797(Gbrowse)
Chromosome: chr01 Position: 38427797 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 69.72% | 30.28% |
| All Indica | 798 | 57.77% | 42.23% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 42.67% | 57.33% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138427797 | T->C | INTERGENIC | None |