Detailed information of SNP:
|
SNP ID:
sf0138428598(Gbrowse)
Chromosome: chr01 Position: 38428598 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.16% | 34.84% |
| All Indica | 796 | 41.96% | 58.04% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 210 | 10.00% | 90.00% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138428598 | A->G | INTERGENIC | None |