Detailed information of SNP:
|
SNP ID:
sf0138430080(Gbrowse)
Chromosome: chr01 Position: 38430080 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.01% | 21.99% |
| All Indica | 799 | 64.58% | 35.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 50.13% | 49.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138430080 | G->A | INTERGENIC | None |