Detailed information of SNP:
|
SNP ID:
sf0138431058(Gbrowse)
Chromosome: chr01 Position: 38431058 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.54% | 34.46% |
| All Indica | 799 | 42.93% | 57.07% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138431058 | T->C | LOC_Os01g66150(LOC_Os01g66150.1) | INTRON |