Detailed information of SNP:
|
SNP ID:
sf0138438833(Gbrowse)
Chromosome: chr01 Position: 38438833 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.21% | 41.79% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138438833 | G->A | LOC_Os01g66170(LOC_Os01g66170.1) | Synonymous |