Detailed information of SNP:
|
SNP ID:
sf0138522595(Gbrowse)
Chromosome: chr01 Position: 38522595 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.25% | 44.75% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138522595 | G->A | LOC_Os01g66330(LOC_Os01g66330.1) | Non-Synonymous SNP |