Detailed information of SNP:
|
SNP ID:
sf0138548457(Gbrowse)
Chromosome: chr01 Position: 38548457 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 52.94% | 47.06% |
| All Indica | 778 | 80.21% | 19.79% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 69.35% | 30.65% |
| Indica II | 200 | 92.50% | 7.50% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138548457 | G->A | LOC_Os01g66379(LOC_Os01g66379.1) | INTRON |