Detailed information of SNP:
|
SNP ID:
sf0138548499(Gbrowse)
Chromosome: chr01 Position: 38548499 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.98% | 45.02% |
| All Indica | 797 | 82.94% | 17.06% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 72.65% | 27.35% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138548499 | T->G | LOC_Os01g66379(LOC_Os01g66379.1) | INTRON |