Detailed information of SNP:
|
SNP ID:
sf0138576619(Gbrowse)
Chromosome: chr01 Position: 38576619 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 94.23% | 5.77% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 482 | 83.82% | 16.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 88.34% | 11.66% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138576619 | T->C | LOC_Os01g66440(LOC_Os01g66440.1) | Synonymous |