Detailed information of SNP:
|
SNP ID:
sf0138584121(Gbrowse)
Chromosome: chr01 Position: 38584121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 68.06% | 31.94% |
| All Indica | 759 | 53.49% | 46.51% |
| All Japonica | 438 | 92.01% | 7.99% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 351 | 69.52% | 30.48% |
| Indica II | 202 | 10.89% | 89.11% |
| Indica Intermediate | 206 | 67.96% | 32.04% |
| Temperate Japonica | 293 | 93.17% | 6.83% |
| Tropical Japonica | 85 | 89.41% | 10.59% |
| Japonica Intermediate | 60 | 90.00% | 10.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138584121 | C->T | LOC_Os01g66450(LOC_Os01g66450.1) | Synonymous |