Detailed information of SNP:
|
SNP ID:
sf0138588363(Gbrowse)
Chromosome: chr01 Position: 38588363 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 78.17% | 21.83% |
| All Indica | 723 | 70.40% | 29.60% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 62 | 16.13% | 83.87% |
| Indica I | 322 | 61.49% | 38.51% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 189 | 58.73% | 41.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138588363 | C->T | LOC_Os01g66470(LOC_Os01g66470.1) | Non-Synonymous SNP |