Detailed information of SNP:
|
SNP ID:
sf0138593417(Gbrowse)
Chromosome: chr01 Position: 38593417 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 95.57% | 4.43% |
| All Indica | 781 | 99.87% | 0.13% |
| All Japonica | 451 | 87.14% | 12.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 300 | 89.67% | 10.33% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138593417 | C->G | LOC_Os01g66480(LOC_Os01g66480.1) | Non-Synonymous SNP |