Detailed information of SNP:
|
SNP ID:
sf0138607913(Gbrowse)
Chromosome: chr01 Position: 38607913 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 64.85% | 35.15% |
| All Indica | 796 | 49.62% | 50.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 34.05% | 65.95% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 32.86% | 67.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138607913 | A->C | INTERGENIC | None |