Detailed information of SNP:
|
SNP ID:
sf0138609717(Gbrowse)
Chromosome: chr01 Position: 38609717 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 799 | 48.69% | 51.31% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138609717 | C->T | INTERGENIC | None |