Detailed information of SNP:
|
SNP ID:
sf0138612837(Gbrowse)
Chromosome: chr01 Position: 38612837 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.40% | 35.60% |
| All Indica | 796 | 48.74% | 51.26% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 33.42% | 66.58% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 30.62% | 69.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138612837 | G->A | LOC_Os01g66490(LOC_Os01g66490.1) | UTR_3_PRIME |