Detailed information of SNP:
|
SNP ID:
sf0138615248(Gbrowse)
Chromosome: chr01 Position: 38615248 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 69.11% | 30.89% |
| All Indica | 798 | 53.51% | 46.49% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 37.07% | 62.93% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138615248 | C->G | INTERGENIC | None |