Detailed information of SNP:
|
SNP ID:
sf0138624483(Gbrowse)
Chromosome: chr01 Position: 38624483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 67.37% | 32.63% |
| All Indica | 798 | 49.62% | 50.38% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 34 | 14.71% | 85.29% |
| Indica I | 374 | 33.42% | 66.58% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 60.00% | 40.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138624483 | C->T | INTERGENIC | None |