Detailed information of SNP:
SNP ID:
sf0138624483(Gbrowse)
Chromosome: chr01 Position: 38624483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1370 | 67.37% | 32.63% |
All Indica | 798 | 49.62% | 50.38% |
All Japonica | 494 | 99.80% | 0.20% |
Aus | 34 | 14.71% | 85.29% |
Indica I | 374 | 33.42% | 66.58% |
Indica II | 213 | 93.90% | 6.10% |
Indica Intermediate | 211 | 33.65% | 66.35% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 65 | 100.00% | 0.00% |
Group VI/Aromatic | 5 | 60.00% | 40.00% |
Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0138624483 | C->T | INTERGENIC | None |