Detailed information of SNP:
|
SNP ID:
sf0138626497(Gbrowse)
Chromosome: chr01 Position: 38626497 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.69% | 31.31% |
| All Indica | 798 | 49.62% | 50.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 33.96% | 66.04% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0138626497 | T->C | INTERGENIC | None |